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43 results found

A unified approach for quantifying and interpreting DNA shape readout by transcription factors

Publication: Journal Article

Rube, Tomas, Chaitanya Rastogi, Judith F Kribelbauer, and Harmen J Bussemaker. 2018. “A Unified Approach for Quantifying and Interpreting DNA Shape Readout by Transcription Factors”. Mol. Syst. Biol. 14 (2): e7902.

Accurate and sensitive quantification of protein-DNA binding affinity

Publication: Journal Article

Rastogi, Chaitanya, Tomas Rube, Judith F Kribelbauer, Justin Crocker, Ryan E Loker, Gabriella D Martini, Oleg Laptenko, et al. 2018. “Accurate and Sensitive Quantification of Protein-DNA Binding Affinity”. Proc. Natl. Acad. Sci. U. S. A. 115 (16): E3692–E3701.

The simplicity of perfect atoms: degeneracies in supersymmetric hydrogen

Publication: Journal Article

Rube, Tomas, and Jay G Wacker. 2011. “The Simplicity of Perfect Atoms: Degeneracies in Supersymmetric Hydrogen”. Journal of Mathematical Physics 52 (6): 062102.

Rube Lab Founded

News: July 01, 2022

Tomas joins the Applied Mathematics Department at the University of California, Merced as an Assistant Professor.

Shahram Joins Lab

News: September 01, 2023

We would like to welcome Applied Math graduate student Shahram to the lab!

Pooled IP-MS grant funded

News: July 31, 2025

Our collaborative project with the Jovanovic Lab at Columbia University was funded by the NSF.

Research

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Our current research spans three areas: Accelerating proteomics research using compressed sensing - Protein-protein interactions (PPIS) are important in governing numerous processes like development and the onset of pathological conditions such as cancer and neurodegenerative disease. PPIs form...

General inflaton potentials in supergravity

Publication: Journal Article

Kallosh, Renata, Andrei Linde, and Tomas Rube. 2011. “General Inflaton Potentials in Supergravity”. Physical Review D.

Seminar

News: October 29, 2021

Tomas gives the Applied Math Seminar at UC Merced.

People

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