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Kim, Minji, Alex Kreig, Chun-Ying Lee, Tomas Rube, Jacob Calvert, Jun S Song, and Sua Myong. 2016. “Quantitative Analysis and Prediction of G-Quadruplex Forming Sequences in Double-Stranded DNA”. Nucleic Acids Res. 44 (10): 4807–4817.

Rube, Tomas, Wooje Lee, Miroslav Hejna, Huaiyang Chen, Dag H Yasui, John F Hess, Janine M LaSalle, Jun S Song, and Qizhi Gong. 2016. “Sequence Features Accurately Predict Genome-Wide MeCP2 Binding in Vivo”. Nat. Commun. 7 (1): 11025.

Kribelbauer, Judith F, Ryan E Loker, Siqian Feng, Chaitanya Rastogi, Namiko Abe, Tomas Rube, Harmen J Bussemaker, and Richard S Mann. 2020. “Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins”. Mol. Cell 78 (1): 152–167.e11.

Zhang, Liyang, John A Zuris, Ramya Viswanathan, Jasmine N Edelstein, Rolf Turk, Bernice Thommandru, Tomas Rube, et al. 2021. “AsCas12a Ultra Nuclease Facilitates the Rapid Generation of Therapeutic Cell Medicines”. Nat. Commun. 12 (1): 4500.

Bell, Robert J A, Tomas Rube, Alex Kreig, Andrew Mancini, Shaun D Fouse, Raman P Nagarajan, Serah Choi, et al. 2015. “Cancer. The Transcription Factor GABP Selectively Binds and Activates the Mutant TERT Promoter in Cancer”. Science 348 (6238): 1036–1039.

Jin, Hu, Tomas Rube, and Jun S Song. 2016. “Categorical Spectral Analysis of Periodicity in Nucleosomal DNA”. Nucleic Acids Res. 44 (5): 2047–2057.

Zhang, Liyang, Gabriella D Martini, Tomas Rube, Judith F Kribelbauer, Chaitanya Rastogi, Vincent D FitzPatrick, Jon C Houtman, Harmen J Bussemaker, and Miles A Pufall. 2018. “SelexGLM Differentiates Androgen and Glucocorticoid Receptor DNA-Binding Preference over an Extended Binding Site”. Genome Res. 28 (1): 111–121.

Kallosh, Renata, Ching Hua Lee, and Tomas Rube. 2009. “N= 8 Supergravity 4-Point Amplitudes”. Journal of High Energy Physics 2009 (02): 050.