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Lohse, Matthew B, Pisiwat Kongsomboonvech, Maria Madrigal, Aaron D Hernday, and Clarissa J Nobile. 2016. “Genome-Wide Chromatin Immunoprecipitation in Candida Albicans and Other Yeasts”. Methods Mol Biol 1361: 161-84.

Hernday, Aaron D, Matthew B Lohse, Clarissa J Nobile, Liron Noiman, Clement N Laksana, and Alexander D Johnson. 2016. “Ssn6 Defines a New Level of Regulation of White-Opaque Switching in Candida Albicans and Is Required For the Stochasticity of the Switch”. MBio 7 (1): 01565-15.

Du, Han, Craig L Ennis, Aaron D Hernday, Clarissa J Nobile, and Guanghua Huang. 2020. “N-Acetylglucosamine (GlcNAc) Sensing, Utilization, and Functions in Candida Albicans”. J Fungi (Basel) 6 (3).

Nguyen, Namkha, Morgan M F Quail, and Aaron D Hernday. 2017. “An Efficient, Rapid, and Recyclable System for CRISPR-Mediated Genome Editing in Candida Albicans”. MSphere 2 (2).

Horwitz, Andrew A, Jessica M Walter, Max G Schubert, Stephanie H Kung, Kristy Hawkins, Darren M Platt, Aaron D Hernday, et al. 2015. “Efficient Multiplexed Integration of Synergistic Alleles and Metabolic Pathways in Yeasts via CRISPR-Cas”. Cell Syst 1 (1): 88-96.

Hernday, Aaron D, Matthew B Lohse, Polly M Fordyce, Clarissa J Nobile, Joseph L DeRisi, and Alexander D Johnson. 2013. “Structure of the Transcriptional Network Controlling White-Opaque Switching in Candida Albicans”. Mol Microbiol 90 (1): 22-35.

Tuch, Brian B, David J Galgoczy, Aaron D Hernday, Hao Li, and Alexander D Johnson. 2008. “The Evolution of Combinatorial Gene Regulation in Fungi”. PLoS Biol 6 (2): e38.

Hernday, Aaron D, Bruce A Braaten, and David A Low. 2003. “The Mechanism by Which DNA Adenine Methylase and PapI Activate the Pap Epigenetic Switch”. Mol Cell 12 (4): 947-57.