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Brenda Castañeda-Castañeda

Person: Staff Research Associate

Brenda Castañeda-Castañeda is a Staff Research Associate in Dr. Yen’s Housing, Opportunity and Place (HOPe) Lab in the Department of Public Health. Brenda currently assists with qualitative research on the experiences of women of color and K-12 school discipline. She has collaborated on research...

Papers

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University of California Merced 2024 17- Amith, W. D., Chen, V. T., Dutagaci, B., Clustering of RNA Polymerase II C-Terminal Domain Models upon Phosphorylation, J. Phys. Chem. B , 2024. 16- Gallardo A., Dutagaci B., Binding of Small Molecule Inhibitors to RNA Polymerase-Spt5 Complex Impacts RNA and...

Teaching

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BIO 101 - Biochemistry I This course covers the fundamentals of biochemistry that include structures and functions of proteins, nucleic acids, membranes and carbohydrates; metabolism. Semester: SS2021, SS2022 BIO 182 - Bioinformatics This course covers bioinformatics, structural modeling and...

The use of direct temperature-resolved mass spectrometry (DTMS) in the detection of organic pigments found in acrylic paints used by Sam Francis

Publication: Journal Article

Menke, Carrie Ann, Rachel Rivenc, and Tom Learner. 2009. “The use of direct temperature-resolved mass spectrometry (DTMS) in the detection of organic pigments found in acrylic paints used by Sam Francis”. International Journal of Mass Spectrometry 284 (1): 2-11.

Structure and stability of NeHe: Experiment and diffusion quantum Monte Carlo theory with on the fly electronic structure

Publication: Journal Article

Brindle, Carrie A., Melissa R. Prado, Kenneth C. Janda, Nadine Halberstadt, and Marius Lewerenz. 2005. “Structure and stability of NeHe: Experiment and diffusion quantum Monte Carlo theory with on the fly electronic structure”. The Journal of Chemical Physics 123: 064312.

A unified approach for quantifying and interpreting DNA shape readout by transcription factors

Publication: Journal Article

Rube, Tomas, Chaitanya Rastogi, Judith F Kribelbauer, and Harmen J Bussemaker. 2018. “A unified approach for quantifying and interpreting DNA shape readout by transcription factors”. Mol. Syst. Biol. 14 (2): e7902.

Evaluation of optimal dose and mixing regime for alum treatment of Matthiesen Creek inflow to Jameson Lake, Washington

Publication: Journal Article

Churchill, JJ, MW Beutel, and PS Burgoon. 2009. “Evaluation of optimal dose and mixing regime for alum treatment of Matthiesen Creek inflow to Jameson Lake, Washington”. Lake and Reservoir Management 25 (1): 102-10.

Effects of oxygen and nitrate on nutrient release from profundal sediments of a large, oligo-mesotrophic reservoir, Lake Mathews, California

Publication: Journal Article

Beutel, MW, AJ Horne, WD Taylor, RF Losee, and RD Whitney. 2008. “Effects of oxygen and nitrate on nutrient release from profundal sediments of a large, oligo-mesotrophic reservoir, Lake Mathews, California”. Lake and Reservoir Management 24 (1): 18-29.

Staggered explicit-implicit time-discretization for elastodynamics with dissipative internal variables

Publication: Journal Article

Roubicek, T., and C. Tsogka. 2021. “Staggered explicit-implicit time-discretization for elastodynamics with dissipative internal variables”. Mathematical Modelling and Numerical Analysis.

Low Rank Plus Sparse Decomposition of Synthetic Aperture Radar Data for Target Imaging

Publication: Journal Article

Leibovich, M., G. Papanicolaou, and C. Tsogka. 2020. “Low Rank Plus Sparse Decomposition of Synthetic Aperture Radar Data for Target Imaging”. IEEE Transactions on Computational Imaging 6: 491-502.