Quantifying the role of steric constraints in nucleosome positioning
Rube, Tomas, and Jun S Song. 2014. “Quantifying the Role of Steric Constraints in Nucleosome Positioning”. Nucleic Acids Res. 42 (4): 2147–2158.
Search
Search results
21 results found
Systematic in vitro profiling of off-target affinity, cleavage and efficiency for CRISPR enzymes
Zhang, Liyang, Tomas Rube, Christopher A Vakulskas, Mark A Behlke, Harmen J Bussemaker, and Miles A Pufall. 2020. “Systematic in Vitro Profiling of Off-Target Affinity, Cleavage and Efficiency for CRISPR Enzymes”. Nucleic Acids Res. 48 (9): 5037–5053.
Understanding TERT promoter mutations: A common path to immortality
Bell, Robert J A, Tomas Rube, Ana Xavier-Magalhães, Bruno M Costa, Andrew Mancini, Jun S Song, and Joseph F Costello. 2016. “Understanding TERT Promoter Mutations: A Common Path to Immortality”. Mol. Cancer Res. 14 (4): 315–323.
Cancer. The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer
Bell, Robert J A, Tomas Rube, Alex Kreig, Andrew Mancini, Shaun D Fouse, Raman P Nagarajan, Serah Choi, et al. 2015. “Cancer. The Transcription Factor GABP Selectively Binds and Activates the Mutant TERT Promoter in Cancer”. Science 348 (6238): 1036–1039.
Categorical spectral analysis of periodicity in nucleosomal DNA
Jin, Hu, Tomas Rube, and Jun S Song. 2016. “Categorical Spectral Analysis of Periodicity in Nucleosomal DNA”. Nucleic Acids Res. 44 (5): 2047–2057.
SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site
Zhang, Liyang, Gabriella D Martini, Tomas Rube, Judith F Kribelbauer, Chaitanya Rastogi, Vincent D FitzPatrick, Jon C Houtman, Harmen J Bussemaker, and Miles A Pufall. 2018. “SelexGLM Differentiates Androgen and Glucocorticoid Receptor DNA-Binding Preference over an Extended Binding Site”. Genome Res. 28 (1): 111–121.
N= 8 Supergravity 4-point amplitudes
Kallosh, Renata, Ching Hua Lee, and Tomas Rube. 2009. “N= 8 Supergravity 4-Point Amplitudes”. Journal of High Energy Physics 2009 (02): 050.
Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors
Feng, Siqian, Chaitanya Rastogi, Ryan E Loker, William J Glassford, Tomas Rube, Harmen J Bussemaker, and Richard S Mann. 2022. “Transcription Factor Paralogs Orchestrate Alternative Gene Regulatory Networks by Context-Dependent Cooperation With Multiple Cofactors”. BioRxiv.
Chaotic inflation and supersymmetry breaking
Kallosh, Renata, Andrei Linde, Keith A Olive, and Tomas Rube. 2011. “Chaotic Inflation and Supersymmetry Breaking”. Physical Review D 84 (8): 083519.
Systems and methods for analyzing sequencing data
Bussemaker, Harmen H, Chaitanya Rastogi, and Hans Tomas Rube. 2021. “Systems and Methods for Analyzing Sequencing Data.”