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31 results found

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors

Publication: Journal Article

Feng, Siqian, Chaitanya Rastogi, Ryan E Loker, William J Glassford, Tomas Rube, Harmen J Bussemaker, and Richard S Mann. 2022. “Transcription Factor Paralogs Orchestrate Alternative Gene Regulatory Networks by Context-Dependent Cooperation With Multiple Cofactors”. BioRxiv.

Chaotic inflation and supersymmetry breaking

Publication: Journal Article

Kallosh, Renata, Andrei Linde, Keith A Olive, and Tomas Rube. 2011. “Chaotic Inflation and Supersymmetry Breaking”. Physical Review D 84 (8): 083519.

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H. Tomas Rube Assistant Professor, Department of Applied Mathematics Starting July 2022, H. Tomas Rube is an assistant professor in Applied Mathematics at University of California, Merced. With an undergraduate degree in engineering physics and a PhD in theoretical physics, Tomas’ research lies at...

A unified approach for quantifying and interpreting DNA shape readout by transcription factors

Publication: Journal Article

Rube, Tomas, Chaitanya Rastogi, Judith F Kribelbauer, and Harmen J Bussemaker. 2018. “A Unified Approach for Quantifying and Interpreting DNA Shape Readout by Transcription Factors”. Mol. Syst. Biol. 14 (2): e7902.

Accurate and sensitive quantification of protein-DNA binding affinity

Publication: Journal Article

Rastogi, Chaitanya, Tomas Rube, Judith F Kribelbauer, Justin Crocker, Ryan E Loker, Gabriella D Martini, Oleg Laptenko, et al. 2018. “Accurate and Sensitive Quantification of Protein-DNA Binding Affinity”. Proc. Natl. Acad. Sci. U. S. A. 115 (16): E3692–E3701.

The simplicity of perfect atoms: degeneracies in supersymmetric hydrogen

Publication: Journal Article

Rube, Tomas, and Jay G Wacker. 2011. “The Simplicity of Perfect Atoms: Degeneracies in Supersymmetric Hydrogen”. Journal of Mathematical Physics 52 (6): 062102.

Rube Lab Founded

News: July 01, 2022

Tomas joins the Applied Mathematics Department at the University of California, Merced as an Assistant Professor.

Research

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Our current research spans three areas: Sequence recognition of transcription factors - Transcription factors (TFs) are proteins that bind specific sites in the genome in order to regulate the expression of nearby genes. This binding, which is stochastic kinetic process, depends on many variables...

General inflaton potentials in supergravity

Publication: Journal Article

Kallosh, Renata, Andrei Linde, and Tomas Rube. 2011. “General Inflaton Potentials in Supergravity”. Physical Review D.

Seminar

News: October 29, 2021

Tomas gives the Applied Math Seminar at UC Merced.