Shedge SV, Zuehlsdorff TJ, Servis MJ, Clark AE, Isborn CM. Effect of Ions on the Optical Absorption Spectra of Aqueously Solvated Chromophores. The Journal of Physical Chemistry A. 2019;123(29):6175–6184. doi:10.1021/acs.jpca.9b03163
Publications
2019
Zuehlsdorff TJ, Montoya-Castillo A es, Napoli JA, Markland TE, Isborn CM. Optical spectra in the condensed phase: Capturing anharmonic and vibronic features using dynamic and static approaches. The Journal of Chemical Physics. 2019;151(7):074111. doi:10.1063/1.5114818
Reimer LC, Leslie M, Bidwell SL, Isborn CM, Lair D, Menke E, Stokes BJ, Hratchian HP. Aiming toward an Effective Hispanic-Serving Chemistry Curriculum. In: Growing Diverse STEM Communities: Methodology, Impact, and Evidence. Vol. Chapter 4. ACS Symposium Series Vol. 1328; 2019. pp. 49–66. doi:10.1021/bk-2019-1328.ch004
2018
Zuehlsdorff TJ, Isborn CM. Modeling absorption spectra of molecules in solution. International Journal of Quantum Chemistry. 2018:e25719. doi:10.1002/qua.25719
The presence of solvent tunes many properties of a molecule, such as its ground and excited state geometry, dipole moment, excitation energy, and absorption spectrum. Because the energy of the system will vary depending on the solvent configuration, explicit solute–solvent interactions are key to understanding solution-phase reactivity and spectroscopy, simulating accurate inhomogeneous broadening, and predicting absorption spectra. In this tutorial review, we give an overview of factors to consider when modeling excited states of molecules interacting with explicit solvent. We provide practical guidelines for sampling solute–solvent configurations, choosing a solvent model, performing the excited state electronic structure calculations, and computing spectral lineshapes. We also present our recent results combining the vertical excitation energies computed from an ensemble of solute–solvent configurations with the vibronic spectra obtained from a small number of frozen solvent configurations, resulting in improved simulation of absorption spectra for molecules in solution.
Zuehlsdorff TJ, Isborn CM. Combining the ensemble and Franck-Condon approaches for calculating spectral shapes of molecules in solution. The Journal of Chemical Physics. 2018;148(2):024110. doi:10.1063/1.5006043
Zuehlsdorff TJ, Napoli JA, Milanese JM, Markland TE, Isborn CM. Unraveling electronic absorption spectra using nuclear quantum effects: Photoactive yellow protein and green fluorescent protein chromophores in water. The Journal of Chemical Physics. 2018;149(2):024107. doi:10.1063/1.5025517
Johnson LE, Elder DL, Kocherzhenko AA, Tillack AF, Isborn CM, Dalton LR, Robinson BH. Poling-induced birefringence in OEO materials under nanoscale confinement. Proc.SPIE. 2018;10738:10738.
Robinson B, Johnson L, Elder DL, Kocherzhenko A, Isborn C, Haffner C, Heni W, Hoessbacher C, Fedoryshyn Y, Salamin Y, et al. Optimization of Plasmonic-Organic Hybrid Electro-Optics. Journal of Lightwave Technology. 2018:1–1. doi:10.1109/JLT.2018.2865882
2017
Kocherzhenko AA, Vazquez XS, Milanese JM, Isborn CM. Absorption Spectra for Disordered Aggregates of Chromophores Using the Exciton Model. Journal of Chemical Theory and Computation. 2017;13(8):3787–3801. doi:10.1021/acs.jctc.7b00477
Optimizing the optical properties of large chromophore aggregates and molecular solids for applications in photovoltaics and nonlinear optics is an outstanding challenge. It requires efficient and reliable computational models that must be validated against accurate theoretical methods. We show that linear absorption spectra calculated using the molecular exciton model agree well with spectra calculated using time-dependent density functional theory and configuration interaction singles for aggregates of strongly polar chromophores. Similar agreement is obtained for a hybrid functional (B3LYP), a long-range corrected hybrid functional (ωB97X), and configuration interaction singles. Accounting for the electrostatic environment of individual chromophores in the parametrization of the exciton model with the inclusion of atomic point charges significantly improves the agreement of the resulting spectra with those calculated using all-electron methods; different charge definitions (Mulliken and ChelpG) yield similar results. We find that there is a size-dependent error in the exciton model compared with all-electron methods, but for aggregates with more than six chromophores, the errors change slowly with the number of chromophores in the aggregate. Our results validate the use of the molecular exciton model for predicting the absorption spectra of bulk molecular solids; its formalism also allows straightforward extension to calculations of nonlinear optical response.
Long MRP, Isborn CM. Combining Explicit Quantum Solvent with a Polarizable Continuum Model. The Journal of Physical Chemistry B. 2017;121(43):10105–10117. doi:10.1021/acs.jpcb.7b06693
A promising approach for accurately modeling both short-range and long-range solvation effects is to combine explicit quantum mechanical (QM) solvent with a classical polarizable continuum model (PCM), but the best PCM for these combined QM/classical calculations is relatively unexplored. We find that the choice of the solvation cavity is very important for obtaining physically correct results since unphysical double counting of solvation effects from both the QM solvent and the classical dielectric can occur with a poor choice of cavity. We investigate the dependence of electronic excitation energies on the definition of the PCM cavity and the self-consistent reaction field method, comparing results to large-scale explicit QM solvent calculations. For excitation energies, we identify the difference between the ground and excited state dipole moments as the key property determining the sensitivity to the PCM cavity. Using a linear response PCM approach combined with QM solvent, we show that excitation energies are best modeled by a solvent excluded surface or a scaled van der Waals surface. For the aqueous solutes studied here, we find that a scaled van der Waals surface defined by universal force field radii scaled by a factor of 1.5 gives reasonable excitation energies. When using an external iteration state-specific PCM approach, however, the excitation energies are most accurate with a larger PCM cavity, such as a solvent accessible surface.